Results for "FTP"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...da install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blast/execut...browser. #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/execut...1156 days ago
Download the genome from NCBI using bash script/command
...at genome set # -for fungi curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refs...} !/^#/ {print $20} ' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genome...} !/^#/ {print $20} ' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genome...$f cd .. done #Reference #ftp://ftp.ncbi.nlm.nih.gov/pub/fa...2542 days ago
Download the gff files from NCBI using bash script/command
...rested in that genome set # -for fungi curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refs...wk '{FS="\t"} !/^#/ {print $20} ' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genome...wk '{FS="\t"} !/^#/ {print $20} ' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genome...2533 days ago
- bio
2479 days ago
Download genomes in batch from NCBI
curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {print $20}' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/)(GCA/)([0-9]{3}/)([0-9]{3}/)([0-9]{3}/)(GCA_.+)|\1\2\3\4\5\6/\6_genomic.fna.gz|' > genomic_file2273 days ago
Install Parrot Virtual Machine !
...tual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ wget ftp://ftp.parrot.org/pub/parrot/release...1547 days ago
Install Python locally on shared Linux server !
...I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget https://www.python.org/ftp/python/2.7.11/Python-2.7.11.t...2108 days ago
Installing Platypus on Ubuntu !
...tabix/knetfile.c.pysam.c:51:0: tabix/knetfile.c.pysam.c: In function ‘kftp_send_cmd’: tabix/knetfile.h:...file.c.pysam.c:241:2: note: in expansion of macro ‘netwrite’ netwrite(ftp->ctrl_fd, cmd, strlen(cmd));...2029 days ago
- ...b&PAGE_TYPE=BlastDocs&DOC_TYPE=Download Ubuntu / Debian sudo apt-get install ncbi-blast+ CentOS # download latest BLAST version wget ftp://ftp.ncbi.nlm.nih.gov/blast/execut...
1771 days ago
Bash script to download SRA file !
...rt of the command ensures we get two files, one for the first and second mate in each pair. We'll use them in this format when aligning. wget ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sr...1569 days ago
