Useful Publications and Websites for Deep Sequencing Data Analysis
...Res 21(5):734-40, 2011. Full Text Compression of DNA sequence reads in FASTQ format. Deorowicz & Grabo...equencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for...3773 days ago
Perl one-liner for bioinformatician !!!
...encing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some too...3622 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...k interface Takes NGS data (.fastq, BAM, SAM), microarrays (Affy...so give raw reads in Fasta or Fastq Reference Sequence used to a...BWA mapping program; Input: FASTQ, Reference sequence file and...mitocondrial variants Input:FASTQ, pileup Reference sequence:...2902 days ago
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Genome Assembly Tools and Software - PART1 !!
...d additional files van be downloaded below. The input data is given by pre-assembled scaffold sequences (FASTA) and NGS paired-read data (FASTA or FASTQ). SSAKE 3.8.4 – As...2679 days ago
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Run miniasm assembler on nanopore reads !
... unitig sequences. Thus the per-base error rate is similar to the raw input reads. Find the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xa...2324 days ago
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