Results for "Features"
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...optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom i...2499 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...the zPicture instructions and we refer the users to these materials for more details. This introduction is mainly focused on some novel features unique to the Mulan.2493 days ago
Web Apollo: a web-based genomic annotation editing platform
...ew genomes. These researchers require tools to describe the functional features of their newly sequenced geno...mple, Chrome or Firefox) to jointly analyze and precisely describe the features of a genome in real time, whe...2485 days ago
LIBSVM -- A Library for Support Vector Machines
...her fields to easily use SVM as a tool. LIBSVM provides a simple interface where users can easily link it with their own programs. Main features of LIBSVM include...2480 days ago
Opera: An optimal genome scaffolding program
...eads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version called OPERA-LG has been re-engineered with features for the assembly of large and...2363 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...ong nanopore reads presents a much more complete representation of the features of the genome and correctly a...embles gene cassettes, rRNAs, transposable elements, and other genomic features that were almost entirely abs...2361 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic informatio...2361 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, an...
2349 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. Th...2342 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...romatin loops in the genome. It then generates a physical 3D model which represents the plausible consensus 3D structure of the genome. Deltafeatures a highly interactive visualiz...2340 days ago
