Short-read assembly using Spades !
...llumina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -o spades_assembly_all_illumina -1 is input file of forward reads -2 is input file of reverse reads --careful&n...838 days ago
619 days ago
Steps to find all the repeats in the genome !
...re you have the genome sequence in a FASTA file format. Let's assume the file is named "genome.fasta"....;: The directory where you want the output files to be saved. <min_length...; Replace <RepeatMasker_out_file> with the path to you...261 days ago