Identify genome-wide synteny with LASTZ alignment
...et chr01.axt.chain AAChr1.txt.sizes FFChr1.txt.sizes chr01.chain.filter chainNet chr01.chain.filter -minSpace=1 AAChr1.txt.sizes...f target.AAChr1 query.FFChr1 perl Get_synteny.pl -i chr1.chain.filter.tnet.synnet.axt.maf -n 0 -m 3...510 days ago
Perl script to parse VCF file !
#!/usr/bin/perl use strict; use warnings; # Usage: ./parse_vcf.pl input.vcf die "Usage: ./parse_vcf.pl input.vcf\n" unless @ARGV; my $vcf_file = shift @ARG...87 days ago