FGENESH - Program for predicting multiple genes in genomic DNA sequences
...te gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et al. (200...1973 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER]...1949 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorit...1949 days ago
Genome assembly forensics: finding the elusive mis-assembly
We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and descri...1935 days ago
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SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
...e enables high-quality TSS identification that is comparable to the highly sophisticated CAGE technology. This package is particularly useful for finding novel TSSs that contribute to...1371 days ago
Sibelia: A comparative genomics tool
...ll also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. Sibelia is useful in finding: (1) shared regions, (2) regi...1362 days ago