Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in...2093 days ago
2100 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...Use soft clipping for supplementary alignment. [false] -C --comment Append FASTQ comment to SAM output. [false] -o --output [STR] Output file (SAM format). [stdout] -h --help Print t...2124 days ago
2138 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...’s extract the 2D sequence data as FASTQ from the MinION data. Nick’s SQK-MAP-006 data are in the old FAST5 format so we use the script in “old_format”: ./poRe_scripts/old...2175 days ago
2176 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...enerated. --gtf STR Path to a General Transfer Format file. If specified, a transcr...me space (not transcriptome). -K, --in-fmt STR Format in which to input reads. Opti...apped. [1] --extcigar - Use the extended CIGAR format for output alignments. [false...2293 days ago
Comment on "BLAST+ updated !!!"
...iagonal_range int_value] [-use_index boolean] [-index_name string] [-lcase_masking] [-query_loc range] [-strand strand] [-parse_deflines] [-outfmt format] [-show_gis] [-num_descriptio...2518 days ago
2800 days ago
Comment on "Bio++ : C Language libraries for your biological need"
MafFilter is a program to process genome alignment in the Multiple Alignment Format. Current version is 1.1.2 http://biopp.univ-montp2.fr/forge/maffilter3241 days ago