Results for "Framework"
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Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
...asus/blob/master/vib2017.pdf. The prepint version is found on http://www.biorxiv.org/content/early/2017/08/09/173872 It uses the pyPaSWAS framework for sequence alignment (https...2002 days ago
regioneR: an R package for the management and comparison of genomic regions
...of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework. With it, it's possible to st...1972 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...f homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to interpret similarity pairs...1971 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.1970 days ago
Biotite: A general framework for computational biology
...p;provides interface for external software. The Biotite package bundles popular tasks in computational biology into an unifying framework, which is easy to use on the...1966 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal com...1951 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is ob...1922 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, v...1868 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result fi...Maria Anisimova, Gaston H Gonnet, Christophe Dessimoz: ALF - A Simulation Framework for Genome Evolution. Mo...1657 days ago
- Dash is a web application framework that provides pure Python abstraction around HTML, CSS, and JavaScript. Dash Bio is a suite of bioinformatics components that make it simpler to...
1643 days ago
