PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evalua...2958 days ago
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Bookmarks Biostatistics materials and books
Biostatistics did not spring fully formed from the brow of R. A. Fisher, but evolved over many years. This process is continuing, although it may not be obvious from the outside. It...2742 days ago
2701 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales w...2624 days ago
GeneProf: analysis of high-throughput sequencing experiment
...mprehensive Resource:GeneProf provides a comprehensive resource of fully analyzed next-generation...d compared and the analysis procedures employed to produce the data are fully transparent (cp. Tutoria...2502 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ets of sequences (query vs. reference), Reduces the processing time of sequences comparisons while providing highest quality results, Contains a fully integrated data filtering eng...2354 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
...yotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully automated (requires minimal h...2307 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
...aired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in Deshpande, V., F...2168 days ago