BEDOPS v2.4.26: high-performance genomic feature operations
...to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale g...w section of the BEDOPS v2.4.26 documentation summarizes the toolkit, functionality and performance enhancem...2541 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph o...nd trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2513 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software sui...ration Sequencing" or NGS): Next-gen analysis for next-gen data! Some of G...bsp;Section 'System Requirements'). Analysis wizards make your life easy:S...tile modules:Advanced users and data analysis experts benefit from GeneProf...2518 days ago
2509 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary bi...about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...cs, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2505 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natura...chers sequencing new genomes. These researchers require tools to describe the function...2495 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
...the emerging new branch of biology known as functional genomics. The book provides t...standing of the principles and approaches of functional genomics and of the potential...tional and experimental approaches to genome analysis.2486 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly...n DNA sequences an important part of analysis pipelines. Here we use Taxobl...sequences. This or similar types of analysis, in combination with manual c...mic data to public repositories. Our analysis pipeline is open-source and f...2377 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2377 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possib...s well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2373 days ago