Results for "Functional annotation"
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Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithm...ved the pressure to conserve the reading frame of functional proteins and developed a test...The majority of discovered motifs are enriched in functional...2733 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA s...re conservation of synteny, in the context of the entire sequences and their annotation. It can read complete EM...
2797 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful...r use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact...2785 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogeneti...
2773 days ago
- Development of cancer is driven by somatic alterations, including numerical and structu...entation algorithm that was applied to obtain CNA profiles. Next, a tailored annotation approach for breakpoint-to-ge...
2154 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of a se...ether there is enrichment for overlap of putative functional elements compared to matched...sesses enrichment on a per cell type basis, since functional...
2746 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-...res minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It...2698 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Id...t.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i...--annotate, -a Add character annotations. --out, -o PDF ou...
2638 days ago
- maftools - An R package to summarize, analyze and visualize...tion. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley...enetic variants is stored in the form of Mutation Annotation Format. This package attempts...
2635 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information from several euka...additionally import their own custom sequence and annotation data. Individual annotation o...
2634 days ago
