2146 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
...tion, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. To rea...2140 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data with...2140 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2112 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low co...tSV is in ANNOVAR-compatible bed format. Users can easily perform downstream annotation using ANNOVAR and disease gen...2112 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...r comparing multiple draft and finished-quality sequences to identify functional elements conserved over evolu...th Mulan/multiTF can be integrated and overlaid with extensive genome annotation data using GALA.2094 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data....to find regions of interest Creation of reports containing data and genome annotation...2076 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved ov...2068 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...qer, a popular gene prediction program which is widely used for plant genome annotation.2054 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For...list as input, including IDs or sequences, and generates annotations for each gene based on multi...2038 days ago