Results for "GO"
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MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. Th...2696 days ago
- ...analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilisti...acings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional...
2694 days ago
- ...aligner should require only modest computational resources. It employs algorithmic techniques that scale...robacterial genomes can be aligned in a few hours. However, the current algorithm’s compute time (pr...
1975 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laborato...2689 days ago
- ...pping region using the complementary strand. When mismatches occur in the overlapping region, the base with the better quality score is chosen.The algorithm is as follows:1.Find the...
2664 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewe...2655 days ago
- ...the different but related Perl 5 language can be found on the Perl 5 documentation website. Bioinformatics Example @ http://examples.perl6.org/categories/rosalind.html...
2653 days ago
- ...ng homology maps is to use exons that are orthologous in multiple genomes as map...each run in each genome are outputted as orthologous segments. The cliques from...enomic coordinates of anchors within each orthologous segment. These anchors can...
2650 days ago
FSA: Fast Statistical Alignment
...is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequenc...can produce superior alignments of sets of homologous sequences which are subject...2650 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widl...
2639 days ago
