NCBI Prokaryotic Genome Annotation Pipeline
...e annotation pipeline that combines ab initio gene prediction algorithms with homology based met...ownload or use outside of the NCBI environment. https://www.ncbi.nlm.nih.gov/genome/annotation_prok/2561 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01&nb...2559 days ago
2559 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...ch as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/2554 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assembl...scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable...2554 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DO...2548 days ago
Genome Annotation Transfer Utility (GATU)
...annotation of these sequences. The program utilizes tBLASTn and BLASTn algorithms to map genes from the r...(the annotated strain) to the new sequence (the unannotated strain). The goal is to annotate the majority...2548 days ago
2548 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262537 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
.... E-value. Meaningful mapping quality. Various alignment strategies (semiglobal bit-vector and Gotoh, anchored). &nb...2539 days ago