LIBSVM -- A Library for Support Vector Machines
...lti-class classification. Since version 2.8, it implements an SMO-type algorithm proposed in this paper:R...8, 2005. You can also find a pseudo code there. (how to cite LIBSVM) Our goal is to help users from other...2483 days ago
orthodotter: Synteny plots (oxford grid)
...--------------------- orthodotter - Plot orthologous genes on an oxford grid....<file> : input file, containing orthologous genes, default is stdin...> : radius of circle representing orthologous genes -format...2476 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads,...ervative traversal of the subgraph of the k-mer (deBruijn) graph of oligonucleotides with unique high q...2386 days ago
QuorUM: An Error Corrector for Illumina Reads
...ads and preserving the most true k-mers, and we introduce a composite statistic π that measures how successful we are at achieving this dual goal. We evaluate the performanc...2385 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC&...2380 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ngine can annotate a typical-sized bacterial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene assignment between giv...2379 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...onary time. Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other seq...2375 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is es...Ss based on shared gene content alone. It implements fast greedy search algorithm and rigorous statistical...2375 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...erested in the quality assement of the raw or event level data, and want to jump straight to the getting FASTQ format files from fast5 files you can go straight to the final section...2370 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...vailable that we used for sequencing the S. cerevisiae genome. To make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr (https://github...2364 days ago