Structure of Binary files used for storing sequencing data-bam and sff
...d sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&am...3917 days ago
Best book Titles for Learning Bionformatics
...ology and Health), Warren Ewens, Gregory Grant, 2001, Springer Verla...fication for Bioinformatics, Arun Jagota, 2000, AKJ Academics Bioin...o C. Setabal, 1997, PWS Pub. Co. Algorithms on Strings, Trees, and...xperimental Strategies, Elena V. Grigorenko (Editor), 2001, CRC Pres...3915 days ago
3912 days ago
Great Place to Study Bioinformatics in Europe
...e so it is important you choose where it will be good backup of computer science,...infrastructure and faculty. Especially having a good teachers in computer scienc...://www.uib.no/en/studieprogram/MAMN-INF/BI/plan Goethe-University in Frankfurt a...3029 days ago
Most Commonly used Awk by Bioinformatician
...y are quite tricky: http://www.pement.org/awk/awk1line.txt And some nice explanations of those one-liners. After reading this you'll have a pretty good grasp! http://www.catonmat...3909 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem :...rhelland.com/1187/hidden-markov-models-viterbi-algorithm-cpg-islands-in-vb6/ For....ca/~murphyk/Software/HMM/labman2.pdf Viterbi Algo at http://en.wikipedia.org/wi...3822 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...011. PubMedCentral De novo assembly Velvet: algorithms for de novo short read...efficient string graph-based sequence assembler. Gonnella & Kurtz, BMC Bioinf...ent computational research in the life sciences. Goecks et al, Genome Biol 11(8):...3776 days ago
Bioinformatics infrastructure speed up Indian agriculture
"Realizing the paradigm shift it can bring about, the government is focusing on increased bioinformatics intervention in agri-sciences. Currently under process, the national grid on...3706 days ago
List of bioinformatics open source projects/software.
...omated docking tools Biochemical Algorithms Library (BALL) http://...wiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100), RefSeq,...aArray https://cabig-stage.nci.nih.gov/community/tools/caArray ont...ics data analysis using a supra-hexagonal map Taverna workbench To...3754 days ago
List of In-silico Binding Site Prediction Tools
...f. fPOP: http://pocket.uchicago.edu/fpop/ (footprinting Pocke...IBIS: http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi is t...n the function prediction category were those which used struc...n pocket (cavity) detection algorithm based on Voronoi tessell...3741 days ago