Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...cd dir — change directory to dir cd .. — go up one directory cd / — go to the root directory cd ~&nb...sh; list items in current directory and show permissions chmod ugo file — change perm...2277 days ago
Computational resources for TE discovery and TE detection
...www.plantgdb.org/prj/TE_nest/TE_nest.html TRANSPO http://alggen.lsi.upc.es/recerca/search/transpo/transpo.html TSDfinder http://www.ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfind...2271 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...lysis too. The tool also supports biological contextualization on the set of interesting genes from the data by allowing downstream analysis such as GO and pathway analysis. The pro...2261 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...847 days ago
Python learning resources for bioinformatics and computational biologist !
...osing Programs (3.x) Data Structures and Algorithms in Python - B. R....ramming - Richard L. Halterman (PDF) (3.2) Google's Python Class (2.4...p;- Jeffrey Elkner (PDF) Problem Solving with Algorithms and Data Structures usi...2252 days ago
Some useful Bioinformatics links
...qtRgN0jAjWel9jnR3ZoTv0P7E7t-wVGo30iojNO7dICajNY_7PE5xVPv6OoLe7...CBI https://www.ncbi.nlm.nih.gov/pubmed/24185095 MAFFT ver.7...ots%26catid%3D52:cat_coding_algorithms_dot-plots%26Itemid%3D76.../README.lastz-1.02.00a.html SOGo - (1652) Inbox https://sogo....2238 days ago
Installing Bio::SCF perl module
...erl Makefile.PLmakemake testmake install jitendra@jitendra-UNLOCK-INSTALL[Bio-SCF-1.01] perl Makefile.PL []Checking if your kit is complete...Looks goodGenerating a Unix-style Make...2215 days ago
Binding Site Prediction in Protein !
...ng of phylogenetic information CRESCENDO Identification protein interaction sites. It uses sequence conservation patterns in homologous proteins to distinguish bet...2199 days ago
Ligand Docking Tools and Software !
...xible ligandChemScore, PLP, ScreenScore, ChemGauss (empirical/consensus) GOLD Stochastic (GA) Flexible ligand and partially flexible targetGoldScore, ChemScore (empirical)...2199 days ago
Tools for Protein-Protein Docking !
...ion of conformations. Refinement of interface side-chains and re-scoring MolFit Global rigid search: FFTShape complementarity Clustering of good solutions, filtering using&...2199 days ago