Binding Site Prediction in Protein !
...model and use to predict the binding site. FINDSITE A threading-based method for ligand-binding site prediction and functional annotation based on binding-site similar...2218 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...orts custom genome builds and annotation databases Performs base trim...saurus Description: “Annotation of genetic variants in repeti...result is suitable for adding annotation by annovar.” HapMu...ncer-specific High-throughput Annotation of Somatic Mutations; Last up...2925 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
... ----------- Gene Set Clustering based on Functional annotation GeneSCF serves as co...r clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOM...2888 days ago
2122 days ago
Genome Assembly Tools and Software - PART1 !!
...n guides the assembly, with concomitant gene annotation. SWAP-Assembler 2...from stranded RNA-Seq reads Comprehensive annotation and quantification of transcr...e specific trace signals, and genome feature annotations. It provides an easy way for...2702 days ago
Tools for bacterial whole genome annotation
...best way to get good quality annotation in a flash, which is particul...AST. NCBI Prokaryotic Genome Annotation Pipeline is designed to annot...ted tool for Bacterial GEnome Annotation ComparisON), a fast tool for...thesizes these data into gene annotations having evidence-based qualit...2348 days ago
List of visualization tools for network biology
...http://rsat.ulb.ac.be/neat/ Ondex Data integration and visualization of large networks http://www.ondex.org/ Osprey Visualization and annotation of biological networks http:...2304 days ago
List of visualization tools for genome alignments
...platform/bioinfo/software/abyss-explorer BamView Genome browser and annotation tool that allows visualizatio...tp://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web toolkit for regional geno...2300 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in devel...2290 days ago
Tools to Predict the Impact of Missense Variants !
...olyPhen‐2, SIFT, FatHMM, MutationTaster‐2, MutationAssessor, Combined Annotation Dependent Depletion, LRT, phy...hat already include a high fraction of pathogenic variantsh Combined Annotation Dependent Depletion (CADD)&ld...2219 days ago