Results for "Gap"
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Comment on "Basic command-line to run BLAST"
...ferent parameters that can be adjusted to customize the search. The most important parameters include the e-value threshold, the word size, and the gap penalties. Perform the s...436 days ago
- ... gap [-on | -off] [-v] [track_rege...p; Display features with or without a separating gap. ...
1533 days ago
Comment on "Tools for Searching Repeats And Palindromic Sequences"
Check out this GAP-Seq: a method for identification of DNA palindromes https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-3941548 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...Mismatch penalty for SW-alignment. [3] -O --open-pen [INT(,INT,INT,INT)] Gap open penalty for SW-alignment...tend: insertion, deletion). [5(,5,5,5)] -E --ext-pen [INT(,INT,INT,INT)] Gap extension penalty for SW-alig...2135 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ing and Computing (3) Genome Institute of Singapore, A*STAR, Singapore Usage: graphmap [options]...nment. sggotoh - Gotoh alignment with affine gaps. Semiglobal. anchor - anchor...ment. Ignored for Myers alignment. [4] -G, --gapopen INT Gap open penalty for...2305 days ago
- ...paired-end reads localized on gaps in scaffolds are assembled and gaps are closed. ***** REQUI...>sca_log.txt > platanus gap_close -c out_scaffold.fa -ip1...sembled sequences that include gaps('N's mean gaps) PREFI...OUTPUT FILE PREFIX_gapClosed.fa: gap-closed scaffold...
2812 days ago
