NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...quencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets...Users can easily perform downstream annotation using ANNOVAR and disease gene discovery using Phenolyzer....2110 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2101 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...;PEP_scaffolder ) for scaffolding genome sequences. The most important feature of this method is to improve the completeness of gene regions and long-coding gene regions (for instance, c...2079 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a...additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignm...2053 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, re...2038 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment mod...). For Annotate module, it accepts gene list as input, including IDs...ases about pathways, diseases, and Gene Ontology. For Enrichment modu...2037 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...mic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently locate...ng to a probabilistic score and clustered to families according to their gene content similarity.2031 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
...e a consistent de novo annotation of the mitogenomic sequences. The software allows for a systematic error screening, the standardisation of gene name and gene boundary designation, anticod...2030 days ago
genoPlotR - plot gene and genome maps project!
...uce reproducible, publication-grade graphics of gene and genome maps. It allows th...ats: Genbank, EMBL, blast, Mauve, and from user-generated tab files Plot several...rt, automatic annotations for genomes, based on gene names Add a user-generated t...1983 days ago
KEGG Mapper – Reconstruct Pathway
...enome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms...umbers. Each line of the gene list contains the user-defined gene identifier followed by, if an...1983 days ago