GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2176 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is part of the...2176 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast...2167 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
...sa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer...-time mode, it can be integrated with simple structural analyses such as gene ordering, plasmid forming.2167 days ago
2197 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...s of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosom...ements, can visualize the data associated with chromosome elements (like gene expression) in the form of he...1862 days ago
2185 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...ualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the Gene Expression Barcode project&nb...2139 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...ed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two micr...2135 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The re...g clouds. More about REViGO... | Please enter a list of Gene Ontology IDs below, each on i...2117 days ago