Results for "Gene Expression."
Top-level pages
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...islands are often located around the promoters of housekeeping genes (which are essential for general cell functions) or other g...ces in inactive genes are usually methylated to suppress their expression. The methylated cytosine may b...3837 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez...assessment of Illumina second-generation sequencing data. Cox et...of large genomes using second-generation sequencing. Schatz et a...blisher Website Differential gene and transcript expression ana...3791 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, change...designing and executing phylogenetic workflows AutoDock http:...Prot KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,...and data integration system GenePattern http://www.broadinsti...rver Bioinformatics and phylogenetics we...3769 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations r...gram package for evolutionary genetics and genomics. http://eggl...ulates interactions among two genetic and one environmental fact...sequence evolution along phylogenetic tre...3749 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformatic..."; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers betwee...”0”..”9”)[rand 36] } 1..8'#Generates a...3640 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...s functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon,...3636 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and ref...eq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expre...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. gnumap...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic pla...3531 days ago
- Since few years miRNA has shown to play important role in therapeutic related researc...h and also known to play vital role in controlling gene expression specifically at tr...ng data : http://www.illumina.com/applications/epigenetics/sm...
3508 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for...?id=bii.seqdatreader&hl=en BioGene:iPhone/iPad BioGene is an information tool for bi...viewer. Key Features: Look up genes by symbol or description. G...es. Key features: Search using gene name o...3553 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their functional inform...ological mechanisms pursue by genes. Pathway Analysis is not onl...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...
3508 days ago
