2573 days ago
2571 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, a...ial metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes in...2559 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arch...process that includes prediction of protein-coding genes, as well as other functional...s such as structural RNAs, tRNAs, small RNAs, pseudogenes, c...2559 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real...facilitates the real-time analysis of positional information such as gene ordering and the detection of genes fr...2552 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is pres...utationally undemanding. It can be combined with genomic signature and/or phylogenetic...2522 days ago
2518 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...cies. Input formats, automated data upload from the UCSC Genome Browser, gene ann...2494 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for recons...f genomes represented as sequences of genes (or synteny blocks) and prod...mes at the internal nodes of the phylogenetic tree. The phylogenetic tr...erest. Since version 2 MGRA supports gene ins...2489 days ago
2377 days ago