Results for "Gene Ontology"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez...blisher Website Differential gene and transcript expression ana...framework for analyzing next-generation DNA sequencing data. Mc...er-representation of specific ontology categories among genes near C...3778 days ago
List of bioinformatics open source projects/software.
...for designing and executing phylogenetic workflows AutoDock http:...UniProt KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100),...flow and data integration system GenePattern http://www.broadinsti...ebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAxML,...3756 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations r...gram package for evolutionary genetics and genomics. http://eggl...ulates interactions among two genetic and one environmental fact...sequence evolution along phylogenetic...3736 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformatici..."; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers betwee...,”0”..”9”)[rand 36] } 1..8'#Generate...3627 days ago
Next generation sequencing in R or bioconductor environment
...rom either ChIP-seq or ChIP-chip experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features s...3624 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and ref...eq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expre...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. gnumap...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic...3518 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at tr...ing data : http://www.illumina.com/applications/epigenetics...
3495 days ago
Apps for Busy Bioinformatics Researchers !!!
...ii.seqdatreader&hl=en BioGene:iPhone/iPad BioGene is an information tool for bi...iled information such as Gene Ontology, mutant phenotype, and pr...Key features: Search using gene name or keywords Browse by featu...Simbiot, Ensembl, NCBI, Gene Ontology, KEGG Pathways, PubMed, Genom...3540 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their functional inform...ological mechanisms pursue by genes. Pathway Analysis is not onl...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...
3495 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and r...ool and produce others. * NextGENe - de novo and reference assem...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. * gnuma...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic...3241 days ago
