FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs...2137 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remainin...or tag clouds. More about REViGO... | Please enter a list of Gene Ontol...2119 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low c...integrates three aligners and three SV callers and generates two integrated call sets...orm downstream annotation using ANNOVAR and disease gene disco...2113 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2103 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The met...ost important feature of this method is to improve the completeness of gene regions and long-coding gene regio...2081 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based app...additional cDNA/EST and/or protein sequences are used to predict gene struc...2055 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, revie...2040 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation...e module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or seq...about pathways, diseases, and Gene Ontology. For Enrichment module, it can accept either...2039 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, th...ysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently locate...score and clustered to families according to their gene conte...2034 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline designed to compute a cons...e software allows for a systematic error screening, the standardisation of gene name and gene bound...2032 days ago