Results for "Gene enrichment"
Bookmarks
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set tha...s and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both...displays, collapsible gene tree plots, a gene famil...2991 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of J...nscriptional complexity at at a given gene or locus, and then processes...t transcripts derived from paralogous genes. Briefly, the process works...cripts that corresponds to paralogous genes....2967 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is...blic sources) Checking sequence quality, trimming, general sequence manipulation Map...-Seq) Microarray Basic analysis of Affymetrix Gene Expre...2933 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of...on network analysis platforms. AccNET collects phylogenetic and functional information...rganization through elements acquired by horizontal gene trans...
2769 days ago
- High-throughput genomics has revolutionized biological research, howev...tative assessment of genome assembly, gene set, and transcriptome comple...olutionarily informed expectations of gene content from near-universal s...mics studies, and the annotated BUSCO gene model...
2919 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2907 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)...ualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Gua...ckage for comparing biological themes among gene clust...
2882 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evoluti...s is challenging, as the phylogenetic signal is usually weak and...o measure the divergence of a gene from its native genomic envir...
2876 days ago
- Recent studies of the human genome have indicated that regulatory elemen...ther via chromatin folding and affect gene expression levels. Genomic te...regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of inter...querying network components based on gene name...
2871 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of b...forming upper-quantile normalization on expression data or convert genome wide gene expre...
2869 days ago
