Results for "Gene enrichment"
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Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical ste...mbly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Predi...2588 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we pres...rently contains a large collection of diverse gene set libraries available for a...contains 180 184 annotated gene sets from 102 gene set l...2579 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it re...
2574 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pri...bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra...t that it cannot replace other alignment-based phylogenetic me...
2572 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query,...al metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into...2560 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arch...process that includes prediction of protein-coding genes, as well as other functional...s such as structural RNAs, tRNAs, small RNAs, pseudogenes, con...2560 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real...facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from...2553 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is pres...utationally undemanding. It can be combined with genomic signature and/or phylogenetic tr...2523 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool...the tool include: Displaying the sequence and/or genes in a GenBank flat...e. Highlighting differences and/or similarities in gene conte...
2520 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...cies. Input formats, automated data upload from the UCSC Genome Browser, gene annot...2495 days ago
