Results for "Gene enrichment"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez...blisher Website Differential gene and transcript expression ana...framework for analyzing next-generation DNA sequencing data. Mc...in Dec 2010 Genomic Regions Enrichment of Annotations Tool - A web s...3777 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, change...designing and executing phylogenetic workflows AutoDock http:...Prot KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,...and data integration system GenePattern http://www.broadinsti...rver Bioinformatics and phylogenetics w...3754 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations r...gram package for evolutionary genetics and genomics. http://eggl...ulates interactions among two genetic and one environmental fact...sequence evolution along phylogenetic tr...3734 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformatici..."; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers betwee...,”0”..”9”)[rand 36] } 1..8'#Generates...3626 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...s functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon...3622 days ago
Commercial and public next-gen-seq (NGS) software
...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic platform for manipulating,...Chromatin Immunoprecipitation enrichment of sequence fragments, indica...ut DNA and computes a precise enrichment and significance. By Rozowsky...3516 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at tr...ing data : http://www.illumina.com/applications/epigenetics/s...
3493 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for...?id=bii.seqdatreader&hl=en BioGene:iPhone/iPad BioGene is an information tool for bi...viewer. Key Features: Look up genes by symbol or description. G...es. Key features: Search using gene name...3539 days ago
- ...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...20Analysis.pdf http://gettinggeneticsdone.blogspot.de/2012/03/p....org/help/search/index.html?q=Enrichment+analysis+
3493 days ago
Software packages for next gen sequence analysis
...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic platform for manipulating,...Chromatin Immunoprecipitation enrichment of sequence fragments, indica...ut DNA and computes a precise enrichment and significance. By Rozowsky...3240 days ago
