Results for "Gene expression"
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MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that comb...tree (MT) methods and 4 genomics context based methods: phylogenetic profiling (PP), gene fusio...2617 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow sm...eats, aligns ESTs and proteins to a genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annot...
3006 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data s...a unified, abstracted interface to multiple common gene annot...
2995 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set tha...s and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both...displays, collapsible gene tree plots, a gene famil...2985 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of J...nscriptional complexity at at a given gene or locus, and then processes...t transcripts derived from paralogous genes. Briefly, the process works...cripts that corresponds to paralogous genes....2962 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ecking sequence quality, trimming, general sequence manipulation Map...lysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets (microarray or RNA-S...ay Basic analysis of Affymetrix Gene Expression Arrays using R/Bioconduc...2928 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of...on network analysis platforms. AccNET collects phylogenetic and functional information...rganization through elements acquired by horizontal gene trans...
2764 days ago
- High-throughput genomics has revolutionized biological research, howev...tative assessment of genome assembly, gene set, and transcriptome comple...olutionarily informed expectations of gene content from near-universal s...mics studies, and the annotated BUSCO gene model...
2914 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2901 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)...ualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Gua...ckage for comparing biological themes among gene clust...
2876 days ago
