Results for "Generates"
Bookmarks
...nt detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads and generates a list of likely variants in...3662 days ago
PhyloGrapher - Graph Visualization Tool
...sualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set...2960 days ago
- ...olds or usable as a common thread for the manual improvement of scaffolds. Description WiseScaffolder includes 4 subcommands: dumpconfig generates a configuration file that not...
2862 days ago
- ...across a wide range of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised training and subsequently generates ab initio gene predictions. A...
1960 days ago
- ...to be used on a multi-core Linux machine with large shared memory. The easiest way to run fermi is to use the run-fermi.pl script. It generates a Makefile. The actual assemb...
2804 days ago
- ...For more information, please see our wiki. HybPiper is run separately for each sample (single or paired-end sequence reads). When HybPiper generates sequence files from the reads...
2748 days ago
- ...types of searching depending on the amplicons types (ITS or 16S). If WGS are chosen, then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format...
2721 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can ch...2625 days ago
- UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The m...
2587 days ago
- ...ation of sequence records for submission to GenBank. It uses many of the same functions as Sequin but is driven generally by data files. Tbl2asn generates .sqn files for submission to...
2542 days ago
