List of generic simulation software/tools/resource with brief description and homepage !!!
...imCopy An R package simulating the evolution of copy number profiles along a tree. http://bit.ly/simcopySIMLA SIMLA is a SIMuLAtion program that generates data sets of families for use...3746 days ago
List of In-silico Binding Site Prediction Tools
...s that share local structural similarities with the query protein and generates structure-based alignments of...www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html The SURFNET program generates surfaces and void regions bet...3753 days ago
Perl one-liner for bioinformatician !!!
...5; $max=15; $, = " "; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers between 5 a...nt map { ("a".."z",”0”..”9”)[rand 36] } 1..8'#Generates a 8 character password from a...3637 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tract and a config file Output: .results file, .Gtype, LOG.txt, also generates visualization DeNovoGear...(referred to as snp138) databases and remove all temporary files, and generates the output file called myanno...2918 days ago
Genome Assembly Tools and Software - PART1 !!
...nnotation and quantification of transcriptomes are outstanding problems in functional genomics. Rnnotator is an automated software pipeline that generates transcript models by de novo...2695 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from a normal dist...2531 days ago
Learning Python Programming - a bioinformatician perspective !
...application development. Python is interpreted language so the program does not need to be compiled. Interpreter parses the program code and generates the output. Python is dynami...2192 days ago
Parallel Processing with Perl !
...each element of array. when one child finishes, Parallel::ForkManager generates a new one and thus you will b...asy? Note:You may worry about concatenation of the output each child generates, since it does take some time...2089 days ago