1091 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S)...2548 days ago
Ensembl comparative genomics resources
...nts are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both protein-coding and non-coding RNA genes. These resources are updated...2987 days ago
RNA-Seq De novo Assembly Using Trinity
...plicing isoforms and to tease apart transcripts derived from paralogous genes. Briefly, the process works l...resents the full transcriptonal complexity for a given gene (or sets of genes that share sequences in commo...2964 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing to...2949 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...nnotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their...2928 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...nd then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsum...2913 days ago
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