List of Bioinformatics Software Tools for Next Generation Sequencing
...only in silico expression; “PrediXcan can detect known and novel genes associated with disease trait...ng to be downloaded); annotates genetic variants; utilizes RefSeq, UCSC Genes, and the Ensembl gene annotat...2902 days ago
Tools for Searching Repeats And Palindromic Sequences
...0-300 kilobases which are that have been copied to another region of the genome.Interspersed RepeatsProcessed Pseudogenes, Retrotranscripts, SINES - Non-functional copies of RNA genes which have been reintegrated...2205 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...ed on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on f...or Official gene symbols as a input. GeneSCF supports more organisms fro...---- Home page:http://genescf.kandurilab.org/ &nbs...2865 days ago
2100 days ago
Genome Assembly Tools and Software - PART1 !!
...arly useful for very common and well-conserved genes (and – in theory &ndash...targeting assembly of specific protein-coding genes using a graph structure combi...re highly accurate and reconstruct full-length genes when transcripts are sequence...2679 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...k word "klados", meaning branch or twig. cladogenesis -- The development of a new...up -- All the taxa descended from a major cladogenesis event, recognized by posses...he Mammalia. radiation -- Event of rapid cladogenesis, believed to occur under co...2455 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...PacBio reads, draft genomes) Software (Perl) https://github.com/warrenlr/LINKS/ Read clustering afcluster Clustering of reads from different genes and different species based o...2364 days ago
Single Cell RNAseq data analysis tutorial !!
...inference of single-cell data using SPADE http://www.nature.com/nprot/journal/v11/n7/full/nprot.2016.066.html OEFinder: Identify ordering effect genes in single cell RNA-seq data...2344 days ago
Tools for bacterial whole genome annotation
...ess that includes prediction of protein-coding genes, as well as other functional...h as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...spectively, against a nonredundant set of KEGG GENES. KOALA (KEGG Orthology And Li...2325 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
.... Strand NGS also supports novel discovery like identification of novel genes, exons and novel splice junct...ol also supports biological contextualization on the set of interesting genes from the data by allowing dow...2257 days ago