Results for "Genome Assembly"
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...s software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can als...3005 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblie...ion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...ysis to identify inconsistencies between the input genome a...
3004 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3004 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3004 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between diffe...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...t a program for aligning sequences to reference genome....
3004 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...lelized program for high-sensitivity, genome-wide synteny; Papaya, an all-...w.broadinstitute.org/science/programs/genome-b...
3004 days ago
- ...rocess of transferring annotations from one genome assembly to another. Usually lift ov...er is done because there is a new, improved genome assembly for the species and good qual...ssembly. The idea is simple: align the new assembly with the old one (e.g., with...
3003 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses differ...r NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/t...
3002 days ago
- ...sive research, centromere locations in yeast genomes are difficult to infer, and...for diverse applications, including de novo genome assembly, deconvolution of metagenom...cations of all centromeres in a single yeast genome by exploiting the centromeres&r...
3001 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalo...by running the binary with no arguments. The UCSC Genome Browser and Blat software are...lFor information about commercial licensing of the Genome B...2995 days ago
