Useful Publications and Websites for Deep Sequencing Data Analysis
...software package] Comparing genomes and assemblies; variant dete...for R are available at the R-project.org website, and video tutor...oudBioLinux is an open-source project that provides a bioinformatic...ty of California - Santa Cruz Genome Browser is on the FAQ list A...3779 days ago
List of bioinformatics open source projects/software.
...ings are the OS bioinformatics projects/software : .NET Bio http:...ibrary (BALL) http://www.ball-project.org/ C++ library and framew...(BLT) http://sourceforge.net/projects/biotutorial/ Educational in...llected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web app...3757 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...lations. http://www.ebi.ac.uk/projects/bargen/download/fregen/docu...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progra...tic data http://www.ebi.ac.uk/projects/bargen/kernalPop A spatially...al composition of typical metagenome data sets http://ab.inf.uni-tu...3737 days ago
Next generation sequencing in R or bioconductor environment
...locations within the Bioconductor project. It is built upon the IRange...tracklayer, GenomicFeatures and BSgenome. Compared to the IRange...SNP analysis: snpMatrix BSgenome BSgenome provides an object...e biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pack...3625 days ago
Commercial and public next-gen-seq (NGS) software
...uences produced on a Illumina Genome Analyzer. A suite created by the 1001 Genomes project. Source for POSIX. SlimSearc...or use on open not-for-profit projects. Requires Linux or Mac OS X....zner from UCSD. (published in Genome Research)RMAP (A program for m...3519 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-...3549 days ago
Apps for Busy Bioinformatics Researchers !!!
...KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...p/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first hand...ne alsocontains an integrated genome browser with information on ge...izona State University). This project has been supported, in part,...3541 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bio...swar National Institute Of Immunology, New Delhi National Centre For Plant Genome...2571 days ago
A guide for complete R beginners !
This tutorial is intended to introduce user...ensive tutorials can be found on the project website and via bioconductor...red here). R-language: http://www.r-project.org BioConductor: http:...from PC) Getting More Help Project Home page http://www.r-pro...3361 days ago
Software packages for next gen sequence analysis
...uences produced on a Illumina Genome Analyzer. A suite created by the 1001 Genomes project. Source for POSIX. * SlimSea...or use on open not-for-profit projects. Requires Linux or Mac OS X....om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux. *...3243 days ago