Results for "Genome Size"
Top-level pages
Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...: http://www.ensembl.org/index.html http://ensemblgeno...3919 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in p...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubM...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...ty of California - Santa Cruz Geno...3784 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form)...h information about biological sequences collected from the environment. GenomeSpace http://www.geno...3761 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...LF A Simulation Framework for Genome Evolution http://www.cbrg.eth...g recent effective population size reductions from allele data fre...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...3741 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp :...ently. As the algorithm is very fast it can be used on a large scale level (PDB size for instance). If you use fpo...3748 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis,...s, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...for SNP analysis: snpMatrix BSgenome BSgenome provides an object...s the biomaRt, IRanges, Biostrings, BSgeno...3629 days ago
Commercial and public next-gen-seq (NGS) software
...ay technologies. SeqMan Genome Analyser - Software for Next..., such as the human reference genome. By default, BWA finds an ali...mina) back to a genome of any size. It seeks to align reads from n...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...3523 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-geno...3553 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the o...COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...om/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...t. SimGene alsocontains an integrated geno...3546 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bior...eswar National Institute Of Immunology, New Delhi National Centre For Plant Geno...2575 days ago
