Results for "Genome Size"
Top-level pages
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwe...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host geno...855 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGeno...2247 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some u...y libz.so.1.2.11 with gcc.Checking for size_t... Yes.Checking for off64_t..... nochecking for short... yeschecking size of short... 2checking for int...t from pointer to integer of different size [-Wpointer-to-int-cast] ret_v...2223 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename....To keep only one copy of duplicated lines: awk '!seen[$0]++' To sum assembly size from SPAdes contigs.fasta or...
2222 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studi...single‐nucleotide variants as well as insertion/deletions variants in the human geno...2208 days ago
- ...###############[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous size [%] heterozygous contigs [%]...#########[Mon May 7 11:29:35 2018] Final reduction...#file name genome size contigs heterozygous s...
2195 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, fo...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full geno...2170 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference geno...2144 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensi...ttp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...er.ac.uk/resources/software/margarita) MaCH http://geno...2101 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinforma...oinformatics we need to deal with huge datasets which are more than 100GB size. The traditional way to analy...2085 days ago
