Comment on "Sibelia: A comparative genomics tool"
...ontains two sets of bacterial genomes. The easiest way to run "Si...r, see section "Minimum block size". You also may be interested...t shown on these diagrams. Genomes from the "examples/Sibelia"...bytes, where N is the total size of all input genomes. You can a...1294 days ago
1530 days ago
2108 days ago
2147 days ago
2185 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...Engineering and Computing (3) Genome Institute of Singapore, A*STA...put SAM alignments will be in genome space (not transcriptome). -K...l be loaded in batches of the size specified in megabytes. Value &...erence sequence is a circular genome. [false] -F, --ambiguity FL...2302 days ago
Comment on "SGA: String Graph Assembler"
Try this hierarchical genome assembly (HGA) assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779561/2715 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis el...protein sets of flies and worms are similar in size and are only twice that of yeas...t different gene families are expanded in each genome, and the multidomain protei...2743 days ago
Comment on "List of popular bioinformatics software/tools"
MEDIPS: genome-wide dierential coverage analysis of sequencing MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments https://www.bioconductor.org/packages/3.3/bioc/vignettes/MEDIPS/inst/doc/MEDIPS.pdf3007 days ago