Opera: An optimal genome scaffolding program
...e guarantees. Genome Biology, May 2016, doi: 10.1186/s13059-016-0951-y.Song Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughpu...2360 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...a much more complete representation of the features of the genome and correctly assembles gene cassettes, rRNAs, transposable elements, and other genomic features that were almost ent...2358 days ago
Computational Genomics: Applied Comparative Genomics
...e the course empowered to conduct independent genomic analyses. We will study...quencing data. The course will focus on human genomics and human medical applicatio...ill include genome assembly & comparative genomics, variant identification &...2358 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2350 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2343 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...ol which enhances the integration of genome topology/physical structure with extensive genome annotation by juxtaposing the 3D model with diverse genomic assay outputs. https://githu...2337 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible param...2309 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query fea...utility of resources such as ENCODE, Roadmap Epigenomics, and GTEx by facilitating da...2316 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms an...hodologies have been developed and integrated to analyze and visualize genomics structure variation, gene di...2303 days ago
HTTDB - Horizontally transferred transposable elements database
...obile genes" capable of mobilization from one genomic location to another through n...t that it inhabits, they are known as selfish genomic parasites. Despite their capa...aracterized by the stable integration a viral genomic fragment into the host genome...2303 days ago