Results for "Genomics & Systems Biology"
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Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as givin...commands from the keyboard and gives them to the operating system. Most Linux systems...2888 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters an..., 2) annotating networks with user-provided private and publicly available functional genomic...
2883 days ago
- CSBB is a command line based bioinformatics suite to analyze...fic modules. Major focus of CSBB is to allow users from biology...ifferent platforms. More at https://github.com/skygenomics/CSBB-v1.0
2881 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. Ho...This software is fully described in the paper:Riba-Grognuz, Keller, Falquet, Xenarios & W...
2825 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chian...4. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186...
2824 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful informati...please cite us as follows: Dragan M‡, Moghul MI‡, Priyam A, Bustos C & W...2823 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and st...2748 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms e...andidate function for novel motifs. Our results demonstrate the power of comparative genomic...2748 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input&nb...s using paired-end and/or mate-pairs reads gap closing Redundans is: fast &&n...
2817 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wi...uscript describing the new features and algorithms is available at Genome Biology. We look forward to getting y...2809 days ago
