Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that the...rrent and 454 files): http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=...3934 days ago
Best book Titles for Learning Bionformatics
...y (Editors), 2003, John Wiley & Sons Bioinformatics for Dummies...c Notredame, 2003, John Wiley & Sons Mathematics of Genome Anal...cs in Computational Molecular Biology (Computational Molecular Biology), Tao Jiang, Ying Xu, Micha...Bioinformatics: Databases and Systems, Stanley Letovsky (Editor),...3932 days ago
Great Place to Study Bioinformatics in Europe
Study bioinformatics is like being jack of all trade so it is important you choose where it will be good back...rmatics/Europe/ https://studyinsweden.se/programmes/?query=bioinformatics&period=ht-2016&le...3046 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data...}{print $2,$4,$5}' input.txt show rows between 20th and 80th: awk 'NR>=20&&NR...3926 days ago
Bioinformatics and Sequencing Courses and Workshops
Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wid...vanced-Courses/index.htm http://www.nova-university.org/pagetop.cfm?MenySidorTop_id=2&op...3921 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG isla...please visit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&ln...3839 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...evant to animal and microbial systems] Sense from sequence reads: m...lignment and assembly. Flicek & Birney, Nat Methods 6(11 Suppl):...of RNA sequencing data. Auer & Doerge, Genetics 185(2):405-16,...are for full-genome alignment & comparisons] Searching for SNP...3794 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, a.../archive/2011/10/18/microsoft-biology-foundation-evolves-into-new-to...plication") http://wolbachia.biology.virginia.edu/WuLab/Software.html Metagenom...p genome browser Integrative Genomics Viewer (IGV) http://www.bro...3771 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage A...brary and program package for evolutionary genetics and genomic...e user http://swfsc.noaa.gov/textblock.aspx?division=fed&id...3751 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins t...epartment of Computational and System Biology...be found here. FINDSITE: http://cssb.biology.gatech.edu/findsite FIN...includes two other programs (dpocket & tpocket) that allow you to extr...3758 days ago