2173 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro m...formation for de novo genome assembly via transposase contiguity. Genome Research 2014 Dec;24(12):2041-9. doi:&...2195 days ago
2194 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...Fosmid or BAC clones) SMRT reads (PacBio) Oxford Nanopore reads 10X Genomics Linked-Reads proximity-ligat...F input should contain diploid variants. If you use HapCUT2 in your research, please cite: Edge, P., Ba...2194 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosom...colors which can be highly advantageous in the scientific interpretations and research work. The package provide mul...1862 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It...s and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Co...2186 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
This code is used to scaffold your assemblies using Hi-C data. This version implements some improvements in the orig...Scaffolding of long read assemblies using long range contact information. BMC genomics...2163 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...ons to small data sets with few libraries. Texas A&M University researchers develop a transcriptome as...gorithm for de novo transcriptome assembly of non-model organisms. BMC Genomics 18(Suppl 4):387.2145 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within g...2139 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyon...course, youmay find this useful for storing functions you create for your own research or for editing existingR pack...1549 days ago