Results for "Greengenes database"
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
...outputFile => undef, database => undef, returnType =...\$param{outputFile}, 'd|database=s' => \$param{database},...) or !( defined( $param{database} ) ) or !( defined( $par...tart&retmax=$retmax&db=$param{database}&query_key=$query_key&WebEnv=...2918 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password...3s (130 kB/s) Selecting previously unselected package dos2unix. (Reading database ... 177704 files and director...1179 days ago
Blast script to index and extract sequence !!
# look at the file $ head EC4115.fa >NC_011353.1 Escheric...CAGACAGATAAAAATTACAGAGTAC # generate the blast database $ makeblastdb -dbtype nucl -...AATATAGGCATAGCGCACAGAC .... # query the blast database by id and coordinates $ blas...2854 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bi...(219 kB/s) Selecting previously unselected package gconf2-common. (Reading database ... 194272 files and director...1178 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHAN...: ___.png A database file containing the...in your sequence. This database is not human-readable,..."$dotfile", 0666) || die "Can't open database $dotfile: $!"; #avoid slurp...
2695 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed i...nts, Detail of the arguments: $@" if [ -f $MYDB.nhr ] then echo "BLAST database for MergedContigs.fasta genom...2654 days ago
Extract fasta sequence from a multifasta file with coordinates
#!/usr/bin/perl use Bio::DB::Fasta; #USAGE perl extractFASTAwithSIZE.pl finalSamp...t ">$id\n", "$sequence\n"; } __END__ use Bio::DB::Fasta; # Create database from a directory of Fasta fil...2534 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git...(Reading database ... 501922 files and director...2021 days ago
- $ sudo apt-get install rakudo [sudo] password for jit: Reading package lists... Done...Selecting previously unselected package libjs-angularjs. (Reading database ... 185114 files and director...
1553 days ago
- $ sudo apt install npm Reading package lists... Done Building dependency tree...s from packages: 100% Selecting previously unselected package gyp. (Reading database ... 180389 files and director...
1555 days ago
