HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes...na. Based on these concerns, we developed the HTT database to keep an updated repository...y TE specialists to add new events and search the database, but also non-specialists. Mo...2308 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and provid...uplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at...2281 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2272 days ago
2199 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and evo...e alignments. In addition, Mulan supports two-way communication with the GALA database; alignments of multiple speci...2095 days ago
swgis v2.0 : a seqword genomic island sniffer
swgis v2.0 is the modified version of the seqword genomic island sniffer. this vers...rent lineages. all identified genomic islands were deposited in the eugi database. download swgis v2.02026 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linu...Then we will do the analysis work for you. https://academic.oup.com/database/article/doi/10.1093/database/baw084/2630454...2013 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was d...that is used to separately search protein or DNA databases. BLAST is best used for sequ...the initial word that must be matched between the database and the query sequence defau...1987 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (h...nsists of four sub packages: sequence, structure, databases, and application. The s...e and structural data analysis respectively, database downloads files from the...1980 days ago
1966 days ago