3021 days ago
2983 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearr...e. Nevertheless is more directed to large-scale since that the main aim of the research is to know where the lar...2947 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) a...ons. Recently, in order to make RAST a more useful research tool and to keep pace with ad...t (RASTtk), a modular version of RAST that enables researchers to build custom annotation...2946 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produc...utation bias along triplets, transition/transversion) post-processing step to group ga...2941 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structur...code. Before you get started be sure to check out: devtools Google Group – https://groups.g...2940 days ago
2933 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes...eel free to add your own by e-mailing us) is here. If you use Satsuma in your research, please cite: Grabherr, M. G....2930 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots wit...graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a...2923 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - know...ipe 0.9.9 released! Download latest, all Documentation Mailing List (Google Group)...2921 days ago