UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adap...ides. We invite all investigators to contribute to this resource to accelerate research and development activities gl...866 days ago
StatBio (Simpson Group WebPage)
2268 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-...2227 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling mult...ioinformatics chat and iTunes. https://github.com/Kingsford-Group/sc...2206 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro...nformation for de novo genome assembly via transposase contiguity. Genome Research 2014 Dec;24(12):2041-9. doi:&...2200 days ago
2199 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequen...only. VCF input should contain diploid variants. If you use HapCUT2 in your research, please cite: Edge, P., Ba...2198 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...which can be highly advantageous in the scientific interpretations and research work. The package provide...ultiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks,...1867 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...he basic data structures and algorithms used.The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Sc...2190 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even bey...course, youmay find this useful for storing functions you create for your own research or for editing existingR pack...1554 days ago