Results for "Guided"
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e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...a novel method that aims to improve de novo assembly in the presence of a closely related reference. The idea is to combine de novo and reference-guided assembly in order to obtain e...2704 days ago
- ...urce code and executables for AMOS-Hybrid are available here: AMOS-Hybrid v1.0 (142 MB tar.gz file). Assembly and sequence-composition guided finishingContigs from a shotg...
2552 days ago
- ...and read-overlap graph assembly Motif finding via Gibbs sampling Gene finding &mdash statistical models for ab initio and evidence-guided prediction of genes RNA-seq...
2359 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using...2220 days ago
- PERGA - Paired End Reads Guided Assembler PERGA is a novel sequence reads guided de novo assembly approach which adopts greedy-like prediction strategy for assembling reads to contigs and scaffolds. Inst...
2171 days ago
mScaffolder: A comparative genome scaffolding tool
...enome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the candidate genome guided by their alignments to the re...2161 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by onl...2120 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
.... Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top–down manner. And along a guided tree, it iteratively merges s...2035 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
...dentifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component toward...1961 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building conti...1943 days ago
