Results for "HGT"
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ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome background to detect HGT events in prokaryotes. https://www.mdpi.com/2073-4425/11/7/756/htm https://shadowcaster.r...Tags: ShadowCaster, hybrid, approach, detection, horizontal, gene, transfer, prokaryotes, HGT
1388 days ago
- My main topics of interest are: The impact of non tree-like evolution such as horizontal gene transfers and hybridization on species biology Evolution and adaptation of animals in the absence of sexual reproduction and the underlying mechanisms Genomic signatures of adaptation to a parasitic...
Tags: Etienne, GJ, Danchin, HGT, Genome, Bioinformatics, Comparative Genomics, French, France, Evolution, Adaptation
1260 days ago
- Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be flexibly parameterised to finetune outputs by charact...
Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes
1159 days ago
Postdoc position at Kiel University, Germany
In the Genomic Microbiology Group of Prof. Tal Dagan at the Institute of Microbiology at Kiel University, Germany, a Postdoc position (m/w/d) in the field of computational evolutionary microbiology is available for an initially limited period of 36 months at the earliest possible date. T...Tags: Kiel, University, Germany, bioinformatics, Tal, Dagan, HGT, Evolution
978 days ago
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