Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally...2268 days ago
Some useful Bioinformatics links
...de novo assembly? - SEQanswers http://seqanswers.com/forums/showthread.php?t=26721 samtools(1) manual pa...om/davfre/8596159 Inroduction to dot-plots http://www.code10.info/index.php%3Foption%3Dcom_content%26view...2255 days ago
Installing Bio::SCF perl module
...o-lib version 1.9 or higher from the Staden library (staden.sourceforge.net). This can be downloaded from https://sourceforge.net/project/showfiles.php?group_id=100316&package_i...2231 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of int...2215 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list...2215 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutio...2215 days ago
Ancestral sequence reconstruction steps !
...and installation on Windows in "http://web.cbio.uct.ac.za/~darren/rdp.html" 4.4- Hyphy (Mac, Windows, Linux) in "http://hyphy.org/w/index.php/Download" 4.5- Path-...2192 days ago
Gap filling or Contigs extensions tools !
...cific situations. Take a look at the PRICE software from the DeRisi lab. Its meant to do something very similar. http://derisilab.ucsf.edu/index.php?page=software You could al...2178 days ago
LINKS scaffolder bloomfilter setting !
...Dbool=char -O3 BloomFilter_wrap.cxx:1892:30: fatal error: ../BloomFilter.hpp: No such file or directory...r -O3 In file included from BloomFilter_wrap.cxx:1877:0: ../BloomFilter.hpp: In member function ‘void Bl...2164 days ago