SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located...2186 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This s...2183 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is...2183 days ago
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chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...tiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documents that can be customi...1870 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for lon...2188 days ago
CGView - Circular Genome Viewer
...r examples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.html http://stothard.afns.ualberta.ca/downloads/CCT/index.html https://www.gview.ca/wiki/...2165 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...plugin framework so users can addd3 visualizations. You can see a video tour here. https://bioconductor.org/packages/release/bioc/html/epivizr.html https://github.com/epiviz h...2147 days ago
Nanopolis: polish a genome assembly
...espect to a reference genome and more (see Nanopolish modules, below). Quickstart http://nanopolish.readthedocs.io/en/latest/quickstart_consensus.html Algorithms http://simpsonla...2130 days ago
2117 days ago